toxodb.orgToxoDB : The Toxoplasma Genomics Resource

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Title:ToxoDB : The Toxoplasma Genomics Resource

Description:ToxoDB : The Toxoplasma Genomics Resource Gene ID: Gene Text Search: About ToxoDB What is ToxoDB? Publications on EuPathDB sites ------ Data in ToxoDB Organisms Viewing Cosmid and BAC Alignments Viewi

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ToxoDB : The Toxoplasma Genomics Resource Gene ID: Gene Text Search: About ToxoDB What is ToxoDB? Publications on EuPathDB sites ------ Data in ToxoDB Organisms Viewing Cosmid and BAC Alignments Viewing Microarray Probes ToxoDB Gene Metrics ------ Submitting data to ToxoDB How to submit data to us EuPathDB Data Submission & Release Policies ------ Usage and Citation How to cite us Citing Data Providers Publications that Use our Resources Data Access Policy ------ Who are we? Scientific Working Group Scientific Advisory Team Acknowledgements Funding EuPathDB Brochure EuPathDB Brochure in Chinese ------ Technical Accessibility VPAT EuPathDB Infrastructure Website Usage Statistics Help Reset ToxoDB Session YouTube Tutorials Channel Web Tutorials EuPathDB Workshop Exercises from Workshop NCBI's Glossary of Terms Our Glossary Contact Us Login Register Contact Us Release 28 31 Mar 16 Home New Search Search for Genes Text, IDs, Organism Text (product name, notes, etc.) Gene ID(s) Organism User Comments Reagent Availability Genomic Position Genomic Location Genomic Location (Non-nuclear) Proximity to Centromeres Gene Attributes Gene Type Exon Count User Comments Annotation Changes Since Previous ToxoDB Release Protein Attributes Molecular Weight Isoelectric Point Protein Secondary Structure PDB 3D Structures Protein Features Predicted Signal Peptide Transmembrane Domain Count Epitope Presence Similarity/Pattern Protein Motif Pattern InterPro Domain BLAST Transcript Expression EST Evidence SAGE Tag Evidence Microarray Evidence RNA Seq Evidence ChIP on Chip Evidence Protein Expression Mass Spec. Evidence Quantitative Mass Spec. Evidence Cellular Location Predicted Signal Peptide Transmembrane Domain Count Putative Function GO Term EC Number Metabolic Pathway Evolution Orthology Phylogenetic Profile Population Biology SNP Characteristics Search for Isolates Isolate ID(s) Taxon/Strain Host Name Isolation Source Locus Sequence Name Geographic Location RFLP Genotype Number RFLP Genotype BLAST Text (search product name, notes, submitter etc.) Search for Genomic Sequences Genomic Sequence ID(s) Organism BLAST Search for Genomic Segments (DNA Motif) DNA Motif Pattern Genomic Location Search for SNPs SNP ID(s) Differences Within a Group of Isolates Genomic Location Gene IDs Differences Between Two Groups of Isolates Search for ESTs EST Accession(s) BLAST Genomic Location Gene ID Extent of Gene Overlap Library Search for ORFs Orf ID(s) Protein Motif Search BLAST Genomic Location Search for SAGE Tags SAGE Tag ID(s) Gene ID Genomic Location Sequence Expression Level Differential Expression Search for Metabolic Pathways Pathway Name/ID Genes Compounds Search for Compounds Compound ID Text (synonym, InChI, etc.) Enzymes Metabolic Pathway Molecular Formula Molecular Weight View all available searches My Strategies My Basket (0) Tools BLAST Results Analysis Sequence Retrieval Companion EuPaGDT PubMed and Entrez Genome Browser Ancillary Genome Browser Searches via Web Services Data Summary Data Sets New Data Sets page! Analysis Methods Genomes and Data Types Gene Metrics Downloads Understanding Downloads Data Files Sequence Retrieval Upload Community Files Download Community Files EuPathDB Publications Community Follow us on Twitter! Follow us on Facebook! Follow us on YouTube! EuPathDB Data Submission & Release Policies Find Genes with Comments from the ToxoDB Community Upload Community Files Download Community Files Upcoming Events Related Sites Public Strategies My Favorites Error This site requires javascript and cookies, but you have javascript turned off. Make sure your browser supports javascript and cookies, and that they are both enabled in your preferences. Data Summary Also check our Gene Metrics >>> News and Tweets 30 March 2016 ToxoDB 28 Released 19 February 2016 ToxoDB 27 Released 15 October 2015 ToxoDB 26 Released 23 July 2015 ToxoDB 25 Released 13 April 2015 ToxoDB 24 Released 19 February 2015 Letter to the EuPathDB Community 22 December 2014 ToxoDB 13.0 Released 10 September 2014 ToxoDB 12.0 Released 8 May 2014 ToxoDB 11.0 Released 30 January 2014 ToxoDB 10.0 Released 14 January 2014 EuPathDB Annual Workshop 25 September 2013 ToxoDB 9.0 Released 31 May 2013 ToxoDB 8.2 Released 10 March 2013 ToxoDB 8.1 Released 30 January 2013 12th International Congress on Toxoplasmosis 20 January 2013 EuPathDB Annual Workshop 31 August 2012 ToxoDB 7.3 Released 11 January 2012 ToxoDB 7.2 Released 11 October 2011 ToxoDB 7.1 Released 21 July 2011 ToxoDB 7.0 Released 3 May 2011 ToxoDB 6.4 Released 22 February 2011 ToxoDB 6.3 Released 20 October 2010 Driving Biological Projects awarded 21 September 2010 ToxoDB 6.2 Released 15 July 2010 New Release of ToxoDB 13 May 2010 New features in ToxoDB 6.0 31 March 2010 EuPathDB Scientific Working Group 15 March 2010 ToxoDB new features 4 February 2010 EuPathDB Driving Biological Projects 22 December 2009 ToxoDB 6.0 released 20 November 2009 Working with Parasite Database Resources Workshop (April 17-21, 2010) 16 November 2009 ToxoDB 5.3 released 12 October 2009 Community Annotation in Progress 25 September 2009 New Features in ToxoDB 14 July 2009 ToxoDB 5.2 released 24 April 2009 ToxoDB 5.1 released 1 December 2008 EuPathDB to take on the kinetoplastida 18 November 2008 ToxoDB 5.0 is released 6 December 2007 ToxoDB 4.3 is released 17 September 2007 T. gondii gene prediction IDs now searchable 19 June 2007 ToxoDB 4.2 is released 5 December 2006 ApiDB Workshop, June 3-6, 2007 17 November 2006 ToxoDB 4.1 is released 27 July 2006 ToxoDB 4.0 release 2 March 2006 GBrowse added to ToxoDB 12 April 2006 OrthoMCL orthologous groups have been updated. 13 January 2006 ToxoDB 4.0 Beta uses GUS 3.5 and the WDK All ToxoDB News >>> Community Resources Follow us on Twitter! Follow us on Facebook! Follow us on YouTube! Community Files Upload Community Files Download Community Files Upcoming Events Global view of EuPathDB training >>> Related Sites EuPathDB EuPathDB Workshops Companion OrthoMCL The Biological Resource Centre for Toxoplasma Toxoplasma gondii GSCID Sequencing Project KEGG Pathways for T. gondii ApicoAP, apicoplast-targeted proteins tool Recent Toxoplasma publications Recent EuPathDB publications PlasmoDB CryptoDB Toxoplasma gondii Genome Project at Sanger EBI Toxoplasma Genome Database T. gondii Gene Index NCBI Entrez Genome Toxoplasma gondii TgSAGEDB: Database of T. gondii SAGE Tags Toxoplasma Genome Map at WashU CDC - Toxoplasmosis NIH - Toxoplasmosis Toxoplasmosis - Prevention Toxoplasmosis - Prevention CDC MMWR report General, Chapter Medical Microbiology, J.P. Dubey National Institute of Allergies and Infectious Diseases The Wellcome Trust (If you have a link that you think would be useful for the community, please send us a note.) Education and Tutorials YouTube Tutorials Channel Web Tutorials (video and pdf) Global view of EuPathDB training EuPathDB Workshops Exercises from 2011 Workshop at UGA (English and Spanish) NCBI's Glossary of Terms Our Glossary Contact Us About ToxoDB What is ToxoDB? Publications on EuPathDB sites ------ Data in ToxoDB Organisms Viewing Cosmid and BAC Alignments Viewing Microarray Probes ToxoDB Gene Metrics ------ Submitting data to ToxoDB How to submit data to us EuPathDB Data Submission & Release Policies ------ Usage and Citation How to cite us Citing Data Providers Publications that Use our Resources Data Access Policy ------ Who are we? Scientific Working Group Scientific Advisory Team Acknowledgements Funding EuPathDB Brochure EuPathDB Brochure in Chinese ------ Technical Accessibility VPAT EuPathDB Infrastructure Website Usage Statistics Expand All | Collapse All Text, IDs, Organism description Text (product name, notes, etc.) Gene ID(s) Organism User Comments Reagent Availability Genomic Position description Genomic Location Genomic Location (Non-nuclear) Proximity to Centromeres Gene Attributes description Gene Type Exon Count User Comments Annotation Changes Since Previous ToxoDB Release Protein Attributes description Molecular Weight Isoelectric Point Protein Secondary Structure PDB 3D Structures Protein Features description Predicted Signal Peptide Transmembrane Domain Count Epitope Presence Similarity/Pattern description Protein Motif Pattern InterPro Domain BLAST Transcript Expression description EST Evidence SAGE Tag Evidence Microarray Evidence RNA Seq Evidence ChIP on Chip Evidence Protein Expression description Mass Spec. Evidence Quantitative Mass Spec. Evidence Cellular Location description Predicted Signal Peptide Transmembrane Domain Count Putative Function description GO Term EC Number Metabolic Pathway Evolution description Orthology Phylogenetic Profile Population Biology description SNP Characteristics Expand All | Collapse All Isolates description Isolate ID(s) Taxon/Strain Host Name Isolation Source Locus Sequence Name Geographic Location RFLP Genotype Number RFLP Genotype BLAST Text (search product name, notes, submitter etc.) Genomic Sequences description Genomic Sequence ID(s) Organism BLAST Genomic Segments (DNA Motif) DNA Motif Pattern Genomic Location SNPs description SNP ID(s) Differences Within a Group of Isolates Genomic Location Gene IDs Differences Between Two Groups of Isolates ESTs description EST Accession(s) BLAST Genomic Location Gene ID Extent of Gene Overlap Library ORFs description Orf ID(s) Protein Motif Search BLAST Genomic Location SAGE Tags description SAGE Tag ID(s) Gene ID Genomic Location Sequence Expression Level Differential Expression Metabolic Pathways description Pathway Name/ID Genes Compounds Compounds description Compound ID Text (synonym, InChI, etc.) Enzymes Metabolic Pathway Molecular Formula Molecular Weight Data Sets BLAST Identify Sequence Similarities Results Analysis Analyze Your Strategy Results Sequence Retrieval Retrieve Specific Sequences using IDs and coordinates Companion Annotate your sequence and determine orthology, phylogeny & synteny EuPaGDT Eukaryotic Pathogen CRISPR guide RNA/DNA Design Tool PubMed and Entrez View the Latest Pubmed and Entrez Results Genome Browser View Sequences and Features in the genome browser Ancillary Genome Browse Access Probeset data and Toxoplasma Array info For additional tools, use the Tools menu in the gray toolbar above..... Searches are sometimes 'redesigned' if database revisions lead to new parameters and/or new parameter choices. When parameters have been modified and we cannot easily map your old choices into the new search, the search will be covered with a X. It means it needs to be revised. Please open strategies marked with and click each search that needs revision. genome annotations are constantly updated to reflect new biological information concerning the sequences. when annotations are updated during a new release of our websites, some ids may change or be retired. If your basket is in error, your basket contains old IDs that could not be mapped to new IDs. download the basket valid IDs (tab delimited, clear all attributes) into a text file; you can later upload them into a new step reset the basket by emptying it Edit Important! You are saving/sharing this strategy, not the IDs in your result. Results might change with subsequent releases of the site if the underlying data have changed. To keep a copy of your current result, please download your IDs. Name: Public: Description (optional): Note: There is a 4,000 character limit. Important! You are saving/sharing this strategy, not the IDs in your result. Results might change with subsequent releases of the site if the underlying data has changed. To keep a copy of your current result, please download your IDs. The following URL allows you to share your strategy with individuals. If you'd like to share your strategy with the entire community, visit the 'All' tab and click the 'Public' checkbox. Email: Password: Remember me on this computer. Forgot Password?Register/Subscribe ToxoDB 28 31 Mar 16 ?2016 The EuPathDB Project Team Please Contact Us with any questions or comments Portions of the website are known to be incompatible with your version of Internet Explorer. If possible, upgrade to IE9 or later, or use another browser such as Chrome or Firefox. If you are unable or not allowed to upgrade your browser, please contact us. Continue using this site with your current browser

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